DNA Binding Motif

Accessions: GadE (RegulonDB 7.5)
Names: GadE, GadE DNA-binding transcriptional activator
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 18
Consensus: TstAwATAryAAAmaccw
Weblogo:
PSSM: P0 A C G T
01 0 0 0 5 T
02 0 2 2 1 s
03 1 0 1 3 t
04 5 0 0 0 A
05 3 0 0 2 w
06 4 0 0 1 A
07 0 0 0 5 T
08 5 0 0 0 A
09 3 0 2 0 r
10 0 2 0 3 y
11 4 0 1 0 A
12 5 0 0 0 A
13 5 0 0 0 A
14 3 2 0 0 m
15 3 0 1 1 a
16 1 2 1 1 c
17 1 2 1 1 c
18 2 0 0 3 w
Binding TFs: ECK120005974 (Bacterial regulatory proteins, luxR family)
Binding Sites: ECK120012094
ECK120012306
ECK120012308
ECK120012310
ECK120015676
ECK125109421

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