DNA Binding Motif

						

			
Accessions: CN0023.1 (JASPAR 2024)

			
Names: LM23
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 18
Consensus: rGCrCCAYCTrsTGGymr
Weblogo: 
PSSM: P0      A      C      G      T
01   2410     92   1019    237      r
02     89    254   3092    323      G
03    100   2736     63    859      C
04   1099    112   2114    433      r
05    174   3439     80     65      C
06     16   3698      9     35      C
07   2882    717     62     97      A
08     11   2571     76   1100      Y
09     20   3698     18     22      C
10     82     67     30   3579      T
11    945    120   2255    438      r
12     58   1102   2485    113      s
13    189    120     67   3382      T
14     19     10   3702     27      G
15    137    117   3378    126      G
16    576   1708    219   1255      y
17   1089   1672    489    508      m
18   2061    458    944    295      r
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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