DNA Binding Motif

Accessions: 1rm1_A (3D-footprint 20231221)
Names: TATA-box binding protein
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
Length: 8
Consensus: gTtTTATA
Weblogo:
PSSM: P0 A C G T
01 13 13 54 16 g
02 0 0 0 96 T
03 13 16 13 54 t
04 0 0 0 96 T
05 0 0 0 96 T
06 96 0 0 0 A
07 0 0 0 96 T
08 96 0 0 0 A
Binding TFs: 1rm1_A (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1rm1_D
1rm1_E

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.