DNA Binding Motif

						

			
Accessions: M0482 (AthalianaCistrome v4_May2016)

			
Names: AGL15.ampDAP, T23985;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: wwcTTTCYwtWTTkGGwAAst
Weblogo: 
PSSM: P0      A      C      G      T
01    225     64     76    219      w
02    262     46     82    194      w
03    117    235    139     93      c
04     49     38      6    491      T
05     16      0      2    566      T
06     89     11     27    457      T
07      1    583      0      0      C
08      0    427      0    157      Y
09    197     85     57    245      w
10    101     91     48    344      t
11    172      3      1    408      W
12      7     10      1    566      T
13     87     54     34    409      T
14    135     40    174    235      k
15    122      1    461      0      G
16      0      5    552     27      G
17    309     62     37    176      w
18    505     24      7     48      A
19    440     12     40     92      A
20     94    160    200    130      s
21    145     85     70    284      t
Binding TFs: T23985 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.