DNA Binding Motif

Accessions: MA0965.1 (JASPAR 2018)
Names: BIM2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: PBM
Length: 10
Consensus: skCACGTGms
Weblogo:
PSSM: P0 A C G T
01 244 261 290 205 s
02 167 143 373 317 k
03 53 897 1 49 C
04 962 0 24 14 A
05 22 885 0 92 C
06 92 0 885 22 G
07 14 24 0 962 T
08 49 1 897 53 G
09 317 373 143 167 m
10 205 290 261 244 s
Binding TFs: Q9CAA4 (Helix-loop-helix DNA-binding domain)
Binding Sites: MA0965.1.1
MA0965.1.10
MA0965.1.11
MA0965.1.12
MA0965.1.13
MA0965.1.14
MA0965.1.15
MA0965.1.16
MA0965.1.17
MA0965.1.18
MA0965.1.19
MA0965.1.2
MA0965.1.20
MA0965.1.3
MA0965.1.4
MA0965.1.5
MA0965.1.6
MA0965.1.7
MA0965.1.8
MA0965.1.9
Publications: Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.