DNA Binding Motif

Accessions: 2kmk_A (3D-footprint 20231221)
Names: Zinc finger protein Gfi-1
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Gfi-1 Zinc Fingers 3-5 complexed with DNA
Length: 9
Consensus: GGcAtTGAT
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 96 0 G
03 10 53 12 21 c
04 96 0 0 0 A
05 12 21 10 53 t
06 0 0 0 96 T
07 0 0 96 0 G
08 85 1 10 0 A
09 0 0 0 96 T
Binding TFs: 2kmk_A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: 2kmk_B
2kmk_C
Publications: Lee S, Doddapaneni K, Hogue A, McGhee L, Meyers S, Wu Z. Solution structure of Gfi-1 zinc domain bound to consensus DNA. Journal of molecular biology 397:1055-66 (2010). [Pubmed]

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