DNA Binding Motif

Accessions: 1pdn_C (3D-footprint 20231221)
Names: PROTEIN (PRD PAIRED)
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONS
Length: 7
Consensus: CnTnACG
Weblogo:
PSSM: P0 A C G T
01 8 69 8 11 C
02 24 24 24 24 n
03 11 8 8 69 T
04 24 24 24 24 n
05 69 8 11 8 A
06 0 87 9 0 C
07 0 0 96 0 G
Binding TFs: 1pdn_C ('Paired box' domain, Homeodomain-like domain)
Binding Sites: 1pdn_A
1pdn_B
Publications: Xu W, Rould M.A, Jun S, Desplan C, Pabo C.O. Crystal structure of a paired domain-DNA complex at 2.5 A resolution reveals structural basis for Pax developmental mutations. Cell 80:639-50 (1995). [Pubmed]

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