DNA Binding Motif
| Accessions: | GerE (DBTBS 1.0) |
| Names: | GerE |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 12 |
| Consensus: | RwwTrGGcrtwy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.70 0 0.25 0.05 R 02 0.42 0.11 0 0.48 w 03 0.33 0 0.23 0.45 w 04 0.05 0 0.12 0.83 T 05 0.50 0 0.50 0 r 06 0 0 1 0 G 07 0.10 0 0.80 0.10 G 08 0 0.61 0.18 0.21 c 09 0.41 0 0.54 0.06 r 10 0.20 0 0.23 0.57 t 11 0.33 0.23 0 0.45 w 12 0.04 0.50 0 0.46 y |
| Binding TFs: | GerE (Bacterial regulatory proteins, luxR family, Sigma-70, region 4, Sigma-70, region 4) |
| Binding Sites: | cgeA_1 cgeA_2 cgeA_3 cgeA_4 cgeA_5 cgeC_1 cotB_1 cotB_2 cotC_1 cotC_2 cotD_1 cotD_2 cotG_1 cotH_1 cotM_1 cotV_1 cotX_1 cotX_2 cotY_1 cotY_2 cwlH_1 ftsY_1 ftsY_2 spoIVCB_1 spoIVCB_2 sspG_1 sspG_2 ydgB_1 yjcZ_1 |
| Publications: | Roels S, Losick R. Adjacent and divergently oriented operons under the control of the sporulation regulatory protein GerE in Bacillus subtilis. Journal of bacteriology 177:6263-75 (1995). [Pubmed] Zheng L, Halberg R, Roels S, Ichikawa H, Kroos L, Losick R. Sporulation regulatory protein GerE from Bacillus subtilis binds to and can activate or repress transcription from promoters for mother-cell-specific genes. Journal of molecular biology 226:1037-50 (1992). [Pubmed] Ichikawa H, Halberg R, Kroos L. Negative regulation by the Bacillus subtilis GerE protein. The Journal of biological chemistry 274:8322-7 (1999). [Pubmed] Sacco M, Ricca E, Losick R, Cutting S. An additional GerE-controlled gene encoding an abundant spore coat protein from Bacillus subtilis. Journal of bacteriology 177:372-7 (1995). [Pubmed] Baccigalupi L, Castaldo G, Cangiano G, Isticato R, Marasco R, De Felice M, Ricca E. GerE-independent expression of cotH leads to CotC accumulation in the mother cell compartment during Bacillus subtilis sporulation. Microbiology (Reading, England) 150:3441-9 (2004). [Pubmed] Henriques A.O, Beall B.W, Moran C.P. CotM of Bacillus subtilis, a member of the alpha-crystallin family of stress proteins, is induced during development and participates in spore outer coat formation. Journal of bacteriology 179:1887-97 (1997). [Pubmed] Zhang J, Ichikawa H, Halberg R, Kroos L, Aronson A.I. Regulation of the transcription of a cluster of Bacillus subtilis spore coat genes. Journal of molecular biology 240:405-15 (1994). [Pubmed] Nugroho F.A, Yamamoto H, Kobayashi Y, Sekiguchi J. Characterization of a new sigma-K-dependent peptidoglycan hydrolase gene that plays a role in Bacillus subtilis mother cell lysis. Journal of bacteriology 181:6230-7 (1999). [Pubmed] Kakeshita H, Oguro A, Amikura R, Nakamura K, Yamane K. Expression of the ftsY gene, encoding a homologue of the alpha subunit of mammalian signal recognition particle receptor, is controlled by different promoters in vegetative and sporulating cells of Bacillus subtilis. Microbiology (Reading, England) 146 ( Pt 10):2595-603 (2000). [Pubmed] Kuwana R, Yamamura S, Ikejiri H, Kobayashi K, Ogasawara N, Asai K, Sadaie Y, Takamatsu H, Watabe K. Bacillus subtilis spoVIF (yjcC) gene, involved in coat assembly and spore resistance. Microbiology (Reading, England) 149:3011-21 (2003). [Pubmed] Bagyan I, Setlow B, Setlow P. New small, acid-soluble proteins unique to spores of Bacillus subtilis: identification of the coding genes and regulation and function of two of these genes. Journal of bacteriology 180:6704-12 (1998). [Pubmed] |
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