DNA Binding Motif

Accessions: 4iht_CD (3D-footprint 20231221)
Names: HTH-type transcriptional regulator BenM
Organisms: Acinetobacter baylyi, strain ATCC 33305 / BD413 / ADP1
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of BenM_DBD/benA site 1 DNA Complex
Length: 16
Consensus: ATAcnnnnnnAGTaTT
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 5 9 13 69 T
03 96 0 0 0 A
04 17 48 18 13 c
05 24 24 24 24 n
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 74 0 21 1 A
12 0 0 96 0 G
13 0 1 0 95 T
14 57 9 13 17 a
15 0 0 0 96 T
16 12 1 1 82 T
Type: Heterodimer
Binding TFs: 4iht_C (Bacterial regulatory helix-turn-helix protein, lysR family)
4iht_D (Bacterial regulatory helix-turn-helix protein, lysR family)
Binding Sites: 4iht_G
4iht_H
Publications: Alanazi AM, Neidle EL, Momany C. The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators. Acta Crystallogr D Biol Crystallogr : (2013). [Pubmed]

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