DNA Binding Motif

Accessions: MA1411.1 (JASPAR 2024)
Names: TSAR1
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: mGCACGTGCr
Weblogo:
PSSM: P0 A C G T
01 31261 26502 19831 22405 m
02 3300 5250 91222 228 G
03 12545 87319 51 84 C
04 93404 16 5527 1052 A
05 284 98016 142 1558 C
06 1558 142 98016 284 G
07 1052 5527 16 93404 T
08 84 51 87319 12545 G
09 228 91222 5250 3300 C
10 32821 14091 33427 19661 r
Publications: Huq E., Al-Sady B., Hudson M., Kim C., Apel K., Quail P. H. Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.. Science 305:1937-1941 (2004). [Pubmed]

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