DNA Binding Motif

Accessions: 1kb6_B (3D-footprint 2022-04-03)
Names: Vitamin D3 Receptor
Organisms: Homo sapiens
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response Element
Length: 6
Consensus: aGGaCA
01 45 20 19 12 a
02 0 0 96 0 G
03 0 0 96 0 G
04 56 4 16 20 a
05 4 83 4 5 C
06 83 4 5 4 A
Binding TFs: 1kb6_B (Zinc finger, C4 type (two domains))
Binding Sites: 1kb6_C
Publications: Shaffer P.L, Gewirth D.T. Structural basis of VDR-DNA interactions on direct repeat response elements. The EMBO journal 21:2242-52 (2002). [Pubmed]


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