DNA Binding Motif

Accessions: Rarb_DBD_3 (HumanTF 1.0), MA0858.1 (JASPAR 2024)
Names: Rarb, Rarb(var.2)
Organisms: Mus musculus
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4, HT-SELEX
Length: 17
Consensus: AGGTCAhmyarAGGTCA
Weblogo:
PSSM: P0 A C G T
01 610 3 39 0 A
02 0 1 713 0 G
03 2 1 663 22 G
04 0 2 0 694 T
05 1 686 2 1 C
06 728 0 4 0 A
07 293 210 15 204 h
08 249 252 140 64 m
09 38 239 116 281 y
10 438 34 41 158 a
11 398 4 218 4 r
12 639 0 37 1 A
13 1 1 682 0 G
14 0 2 663 26 G
15 0 3 4 674 T
16 0 765 0 4 C
17 693 0 2 1 A
Type: Heterodimer
Binding TFs: P22605 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
Rarb_DBD (Zinc finger, C4 type (two domains))
P22605
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

Bastien J, Rochette-Egly C. Nuclear retinoid receptors and the transcription of retinoid-target genes. Gene : (2004). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.