DNA Binding Motif

Accessions: 1f2i_J (3D-footprint 20231221)
Names: FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA
Length: 6
Consensus: CGCCCa
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 0 0 77 19 G
03 0 96 0 0 C
04 0 96 0 0 C
05 0 96 0 0 C
06 39 19 19 19 a
Binding TFs: 1f2i_J (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1f2i_C / 1f2i_D
Publications: Wang B.S, Grant R.A, Pabo C.O. Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA. Nature structural biology 8:589-93 (2001). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.