DNA Binding Motif

						

			
Accessions: MA1228.1 (JASPAR 2024), M0121 (AthalianaCistrome v4_May2016)

			
Names: AT4G18450, ERF091, AT4G18450.DAP, T17575;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 17
Consensus: ryGGCGGCGGmggcggy
Weblogo: 
PSSM: P0      A      C      G      T
01    187     52    263     35      r
02     78    289      0    170      y
03      0      0    534      3      G
04     34      0    503      0      G
05      0    526      0     11      C
06      0      0    537      0      G
07      0      0    537      0      G
08     13    505      0     19      C
09      6      7    472     52      G
10     85     69    378      5      G
11    179    205     32    121      m
12     91     25    337     84      g
13    128     48    288     73      g
14    124    221     72    120      c
15    104     50    299     84      g
16    101     68    290     78      g
17    127    182     83    145      y
Type: Heterodimer
Binding TFs: T17575 (AP2 domain)
Q8LBQ7 (AP2 domain)
Q8LBQ7
Binding Sites: MA1228.1.1
MA1228.1.10
MA1228.1.11
MA1228.1.12
MA1228.1.13
MA1228.1.14
MA1228.1.15
MA1228.1.16
MA1228.1.17
MA1228.1.18
MA1228.1.19
MA1228.1.2
MA1228.1.20
MA1228.1.3
MA1228.1.4
MA1228.1.5
MA1228.1.6
MA1228.1.7
MA1228.1.8
MA1228.1.9
			
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.