DNA Binding Motif

Accessions: 1u8r_B (3D-footprint 20231221)
Names: Iron-dependent repressor ideR
Organisms: Mycobacterium tuberculosis, strain ATCC 25618 / H37Rv
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of an IdeR-DNA Complex Reveals a Conformational Change in Activated IdeR for Base-specific Interactions
Length: 6
Consensus: CCcTaA
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 0 96 0 0 C
03 17 45 17 17 c
04 0 0 0 96 T
05 54 17 17 8 a
06 78 8 0 10 A
Binding TFs: 1u8r_B (Iron dependent repressor, N-terminal DNA binding domain, Iron dependent repressor, metal binding and dimerisation domain, FeoA domain, Winged helix DNA-binding domain)
Binding Sites: 1u8r_E
1u8r_F
Publications: Wisedchaisri G, Holmes R.K, Hol W.G. Crystal structure of an IdeR-DNA complex reveals a conformational change in activated IdeR for base-specific interactions. Journal of molecular biology 342:1155-69 (2004). [Pubmed]

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