DNA Binding Motif

Accessions: 4x4f_ABCD (3D-footprint 20231221)
Names: Regulatory protein
Organisms: Enterobacter sp. RFL1396
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 20.6 MGy
Length: 33
Consensus: TGTGACTnnnnntCnGyGTGnAnnnnGTCnACA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 0 0 96 0 G
03 1 1 1 93 T
04 17 0 76 3 G
05 96 0 0 0 A
06 0 96 0 0 C
07 3 0 0 93 T
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 3 13 15 65 t
14 1 92 1 2 C
15 24 24 24 24 n
16 2 0 94 0 G
17 0 57 1 38 y
18 1 17 78 0 G
19 1 4 1 90 T
20 0 1 95 0 G
21 24 24 24 24 n
22 93 1 1 1 A
23 24 24 24 24 n
24 24 24 24 24 n
25 24 24 24 24 n
26 24 24 24 24 n
27 15 7 71 3 G
28 1 1 1 93 T
29 0 96 0 0 C
30 24 24 24 24 n
31 93 1 1 1 A
32 0 96 0 0 C
33 96 0 0 0 A
Type: Heterodimer
Binding TFs: 4x4f_A / 4x4f_D (Helix-turn-helix, Helix-turn-helix domain)
4x4f_B / 4x4f_C (Helix-turn-helix, Helix-turn-helix domain)
Binding Sites: 4x4f_E
4x4f_F
Publications: Bury C, Garman EF, Ginn HM, Ravelli RB, Carmichael I, Kneale G, McGeehan JE. Radiation damage to nucleoprotein complexes in macromolecular crystallography. J Synchrotron Radiat 22:213-24 (2015). [Pubmed]

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