DNA Binding Motif

						

			
Accessions: MA1156.1 (JASPAR 2024), M0319 (AthalianaCistrome v4_May2016)

			
Names: JKD, JKD.DAP, T22529;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 20
Consensus: wwwwtTTTTGTCkTTTTstk
Weblogo: 
PSSM: P0      A      C      G      T
01    163    108     67    258      w
02    161     99     72    264      w
03    162    101     79    254      w
04    176     63     75    282      w
05    145     70     74    307      t
06     83     30     31    452      T
07      6     24     13    553      T
08      0      5      4    587      T
09      0     10      0    586      T
10      0      0    596      0      G
11      0      0     13    583      T
12     11    564      0     21      C
13     31     62    331    172      k
14      9     20     42    525      T
15     57     99     34    406      T
16     87      0      0    509      T
17    134     27      8    427      T
18     71    228    193    104      s
19     47    135     39    375      t
20    143     55    209    189      k
Type: Heterodimer
Binding TFs: Q700D2 / T22529 (Zinc finger, C2H2 type, Zinc-finger double-stranded RNA-binding)
Q700D2
Binding Sites: MA1156.1.1
MA1156.1.10
MA1156.1.11
MA1156.1.12
MA1156.1.13
MA1156.1.14
MA1156.1.15
MA1156.1.16
MA1156.1.17
MA1156.1.18
MA1156.1.19
MA1156.1.2
MA1156.1.20
MA1156.1.3
MA1156.1.4
MA1156.1.5
MA1156.1.6
MA1156.1.7
MA1156.1.8
MA1156.1.9
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.