DNA Binding Motif

Accessions: CG12029_SOLEXA_5_FBgn0035454 (FlyZincFinger 1.0 )
Names: CG12029
Organisms: Drosophila melanogaster
Libraries: FlyZincFinger 1.0 1
1 Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]
Length: 15
Consensus: krtGGGTGTGGYybk
Weblogo:
PSSM: P0 A C G T
01 200 114 297 227 k
02 248 147 377 198 r
03 259 19 203 595 t
04 60 2 980 34 G
05 9 3 1031 33 G
06 10 0 1062 4 G
07 97 237 0 742 T
08 9 0 1058 9 G
09 11 44 109 912 T
10 12 0 1052 12 G
11 9 21 911 135 G
12 18 767 0 291 Y
13 214 328 174 360 y
14 164 278 331 274 b
15 175 170 334 311 k
Binding TFs: CG12029 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Publications: Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]

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