DNA Binding Motif

						

			
Accessions: MA1024.1 (JASPAR 2024)

			
Names: HAT1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: syAATCATkr
Weblogo: 
PSSM: P0      A      C      G      T
01    149    374    328    149      s
02     69    506     69    356      y
03   1000      0      0      0      A
04   1000      0      0      0      A
05      0      0      0   1000      T
06      0   1000      0      0      C
07   1000      0      0      0      A
08     98      0      0    902      T
09    101    101    286    512      k
10    349    181    289    181      r
Type: Heterodimer
Binding TFs: P46600 (Homeobox domain, Homeobox associated leucine zipper, HD-ZIP protein N terminus)
P46600
			
Publications: Sessa G., Morelli G., Ruberti I. The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J. 12:3507-3517 (1993). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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