DNA Binding Motif
| Accessions: | 5jlx_A (3D-footprint 20231221) |
| Names: | Homeotic protein antennapedia |
| Organisms: | Drosophila melanogaster |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | AntpHD with 15bp DNA duplex S-monothioated at Cytidine-8 |
| Length: | 7 |
| Consensus: | GCATTAG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 7 7 73 9 G 02 0 96 0 0 C 03 73 9 7 7 A 04 0 0 0 96 T 05 7 9 7 73 T 06 75 7 7 7 A 07 0 0 96 0 G |
| Binding TFs: | 5jlx_A (Homeobox domain) |
| Binding Sites: | 5jlx_C 5jlx_B |
| Publications: | Nguyen D, Zandarashvili L, White MA, Iwahara J. Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity. Chembiochem 17:1636-42 (2016). [Pubmed] |
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