DNA Binding Motif

Accessions: M1085_1.02 (CISBP 1.02)
Names: ceh-19, T098452_1.02
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 9
Consensus: yTaAtwgby
Weblogo:
PSSM: P0 A C G T
01 0.1415 0.2630 0.1532 0.4423 y
02 0.1409 0.0627 0.0556 0.7409 T
03 0.6537 0.0526 0.0717 0.2220 a
04 0.9237 0.0355 0.0392 0.0016 A
05 0.1585 0.1186 0.0734 0.6494 t
06 0.3419 0.0960 0.1767 0.3854 w
07 0.1860 0.0671 0.6236 0.1234 g
08 0.1703 0.2724 0.2981 0.2592 b
09 0.1530 0.3143 0.2024 0.3304 y
Binding TFs: T098452_1.02 (Homeobox domain)
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

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