DNA Binding Motif

Accessions: 3gat_A (3D-footprint 20231221)
Names: ERYTHROID TRANSCRIPTION FACTOR GATA-1
Organisms: Gallus gallus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: SOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF CHICKEN GATA-1 BOUND TO DNA, 34 STRUCTURES
Length: 5
Consensus: AGaTa
Weblogo:
PSSM: P0 A C G T
01 75 7 7 7 A
02 0 0 96 0 G
03 60 12 12 12 a
04 10 10 10 66 T
05 45 19 16 16 a
Binding TFs: 3gat_A (GATA zinc finger)
Binding Sites: 3gat_B
3gat_C
Publications: Tjandra N, Omichinski J.G, Gronenborn A.M, Clore G.M, Bax A. Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solution. Nature structural biology 4:732-8 (1997). [Pubmed]

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