DNA Binding Motif

Accessions: MA0531.1 (JASPAR 2024)
Names: CTCF
Organisms: Drosophila melanogaster
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-chip
Length: 15
Consensus: ccgmyAGrTGGCGCy
Weblogo:
PSSM: P0 A C G T
01 306 876 403 317 c
02 313 1147 219 223 c
03 457 383 826 236 g
04 676 784 350 92 m
05 257 714 87 844 y
06 1534 1 192 175 A
07 202 0 1700 0 G
08 987 0 912 3 r
09 2 4 311 1585 T
10 0 0 1902 0 G
11 2 0 1652 248 G
12 124 1645 3 130 C
13 1 0 1807 94 G
14 79 1514 8 301 C
15 231 773 144 754 y
Type: Heterodimer
Binding TFs: Q9VS55 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc-finger domain)
Q9VS55
Binding Sites: MA0531.1.1
MA0531.1.10
MA0531.1.11
MA0531.1.12
MA0531.1.13
MA0531.1.14
MA0531.1.15
MA0531.1.16
MA0531.1.17
MA0531.1.18
MA0531.1.19
MA0531.1.2
MA0531.1.20
MA0531.1.3
MA0531.1.4
MA0531.1.5
MA0531.1.6
MA0531.1.7
MA0531.1.8
MA0531.1.9
Publications: Holohan E.E, Kwong C, Adryan B, Bartkuhn M, Herold M, Renkawitz R, Russell S, White R. CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex. PLoS genetics 3:e112 (2007). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.