DNA Binding Motif

						

			
Accessions: 1mjo_ABCD (3D-footprint 20231221)

			
Names: METHIONINE REPRESSOR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: METHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO AT
Length: 16
Consensus: rGACGTCaTGACGACT
Weblogo: 
PSSM: P0      A      C      G      T
01     34      0     59      3      r
02      0      0     96      0      G
03     96      0      0      0      A
04      0     92      3      1      C
05     19      1     75      1      G
06      0      0      0     96      T
07      0     96      0      0      C
08     63     17      7      9      a
09      4      3      3     86      T
10      0      0     96      0      G
11     96      0      0      0      A
12      0     89      0      7      C
13      5      1     90      0      G
14     71      3      3     19      A
15      0     96      0      0      C
16      4      5      1     86      T
Binding TFs: 1mjo_A / 1mjo_B / 1mjo_C / 1mjo_D (Met Apo-repressor, MetJ)
Binding Sites: 1mjo_F / 1mjo_G
			
Publications: Garvie C.W, Phillips S.E. Direct and indirect readout in mutant Met repressor-operator complexes. Structure (London, England : 1993) 8:905-14 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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