DNA Binding Motif

Accessions: MA1232.1 (JASPAR 2024), M0112 (AthalianaCistrome v4_May2016)
Names: AT4G28140, ERF054, At4g28140.DAP, T17566;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 20
Consensus: GdCGGyGgmgrhggyggygr
Weblogo:
PSSM: P0 A C G T
01 11 3 546 7 G
02 153 21 199 194 d
03 1 564 0 2 C
04 0 0 567 0 G
05 0 2 565 0 G
06 0 213 0 354 y
07 23 12 484 48 G
08 77 96 374 20 g
09 213 190 40 124 m
10 99 30 330 108 g
11 179 62 236 90 r
12 142 178 85 162 h
13 108 71 275 113 g
14 132 82 264 89 g
15 115 158 93 201 y
16 125 83 282 77 g
17 121 92 250 104 g
18 115 153 110 189 y
19 121 97 245 104 g
20 144 85 231 107 r
Type: Heterodimer
Binding TFs: Q9M0J3 / T17566 (AP2 domain)
Q9M0J3
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.