DNA Binding Motif
| Accessions: | 1gt0_D (3D-footprint 20231221) |
| Names: | TRANSCRIPTION FACTOR SOX-2 |
| Organisms: | Mus musculus |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of a POU/HMG/DNA ternary complex |
| Length: | 9 |
| Consensus: | CTTTGTnng |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 96 0 0 C 02 0 0 0 96 T 03 0 0 0 96 T 04 0 0 0 96 T 05 20 0 76 0 G 06 0 0 0 96 T 07 24 24 24 24 n 08 24 24 24 24 n 09 19 20 38 19 g |
| Binding TFs: | 1gt0_D (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Sites: | 1gt0_A 1gt0_B |
| Publications: | Reményi A, Lins K, Nissen L.J, Reinbold R, Schöler H.R, Wilmanns M. Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers. Genes & development 17:2048-59 (2003). [Pubmed] |
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