DNA Binding Motif

						

			
Accessions: 6omf_F (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor RpoS
Organisms: Salmonella enterica subsp. enterica serovar Typhimurium
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CryoEM structure of SigmaS-transcription initiation complex with activator Crl
Length: 29
Consensus: TAACgnGAGCAnCnnnnnnnnnnnncGcT
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     96      0      0      0      A
03     96      0      0      0      A
04      0     96      0      0      C
05     11     11     62     12      g
06     24     24     24     24      n
07      0      0     96      0      G
08     96      0      0      0      A
09      0      0     96      0      G
10      0     96      0      0      C
11     96      0      0      0      A
12     24     24     24     24      n
13      7     79      5      5      C
14     24     24     24     24      n
15     24     24     24     24      n
16     24     24     24     24      n
17     24     24     24     24      n
18     24     24     24     24      n
19     24     24     24     24      n
20     24     24     24     24      n
21     24     24     24     24      n
22     24     24     24     24      n
23     24     24     24     24      n
24     24     24     24     24      n
25     24     24     24     24      n
26     18     56     11     11      c
27      0      0     96      0      G
28     11     62     11     12      c
29      0      0      0     96      T
Binding TFs: 6omf_F (Sigma-70 factor, region 1.2, Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4)
Binding Sites: 6omf_N
6omf_T
			
Publications: Cartagena AJ, Banta AB, Sathyan N, Ross W, Gourse RL, Campbell EA, Darst SA. Structural basis for transcription activation by Crl through tethering of σ(S) and RNA polymerase. Proc Natl Acad Sci U S A 116:18923-18927 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.