DNA Binding Motif

Accessions: 6a8r_A (3D-footprint 20231221)
Names: Double homeobox protein 4
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of DUX4 HD2 domain associated with ERG DNA binding site
Length: 4
Consensus: rTCA
Weblogo:
PSSM: P0 A C G T
01 48 9 30 9 r
02 1 0 0 95 T
03 0 95 0 1 C
04 79 1 13 3 A
Binding TFs: 6a8r_A (Homeobox domain, Homeobox KN domain)
Binding Sites: 6a8r_E
6a8r_F
Publications: Dong X, Zhang H, Cheng N, Li K, Meng G. DUX4(HD2)-DNA(ERG) structure reveals new insight into DUX4-Responsive-Element. Leukemia : (2018). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.