DNA Binding Motif

Accessions: 1qnc_B (3D-footprint 20231221)
Names: TRANSCRIPTION INITIATION FACTOR TFIID-1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the A(-31) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.
Length: 8
Consensus: sTkTTATT
Weblogo:
PSSM: P0 A C G T
01 2 54 27 13 s
02 0 0 0 96 T
03 13 13 27 43 k
04 0 0 0 96 T
05 0 0 0 96 T
06 96 0 0 0 A
07 0 0 0 96 T
08 0 0 0 96 T
Binding TFs: 1qnc_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1qnc_E
1qnc_F
Publications: Patikoglou G.A, Kim J.L, Sun L, Yang S.H, Kodadek T, Burley S.K. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & development 13:3217-30 (1999). [Pubmed]

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