DNA Binding Motif

Accessions: MA1404.1 (JASPAR 2018), M0150 (AthalianaCistrome v4_May2016)
Names: BPC1, BPC1.DAP, T10218;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 24
Consensus: GAGAGAGAGAGAGAGAGAGAGAGA
Weblogo:
PSSM: P0 A C G T
01 82 18 421 18 G
02 483 4 29 23 A
03 8 15 483 33 G
04 501 0 18 20 A
05 67 9 448 15 G
06 500 0 39 0 A
07 43 17 461 18 G
08 478 3 44 14 A
09 39 0 482 18 G
10 520 6 2 11 A
11 27 2 508 2 G
12 518 11 3 7 A
13 62 9 450 18 G
14 460 0 56 23 A
15 54 0 462 23 G
16 485 0 54 0 A
17 41 10 467 21 G
18 508 0 9 22 A
19 71 2 459 7 G
20 478 12 35 14 A
21 73 19 440 7 G
22 450 15 39 35 A
23 47 20 427 45 G
24 436 22 43 38 A
Binding TFs: T10218 / Q9SKD0 (GAGA binding protein-like family)
Binding Sites: MA1404.1.16 / MA1404.1.1 / MA1404.1.17 / MA1404.1.14 / MA1404.1.11 / MA1404.1.7 / MA1404.1.12
MA1404.1.10
MA1404.1.13
MA1404.1.15
MA1404.1.18
MA1404.1.19
MA1404.1.2
MA1404.1.20 / MA1404.1.6 / MA1404.1.3
MA1404.1.4
MA1404.1.8 / MA1404.1.5
MA1404.1.9
Publications: Kooiker M., Airoldi C. A., Losa A., Manzotti P. S., Finzi L., Kater M. M., Colombo L. BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK.. Plant Cell 17:722-729 (2005). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer

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