DNA Binding Motif

Accessions: MA0383.1 (JASPAR 2018)
Names: SMP1
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: PBM
Length: 21
Consensus: tkacctwtAATTawaybwscw
Weblogo:
PSSM: P0 A C G T
01 111 244 235 409 t
02 189 188 265 356 k
03 569 97 137 196 a
04 85 554 158 201 c
05 179 623 47 149 c
06 130 147 85 637 t
07 408 128 112 350 w
08 97 234 33 634 t
09 750 125 46 77 A
10 865 18 18 97 A
11 97 18 18 865 T
12 77 46 125 750 T
13 634 33 234 97 a
14 495 41 60 402 w
15 637 85 147 130 a
16 197 262 146 393 y
17 174 275 271 279 b
18 525 104 101 269 w
19 156 290 455 97 s
20 249 381 201 168 c
21 336 172 229 261 w
Binding TFs: P38128 (SRF-type transcription factor (DNA-binding and dimerisation domain))
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

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