DNA Binding Motif

Accessions: 3n4m_ABC (3D-footprint 20231221)
Names: Catabolite gene activator
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: E. coli RNA polymerase alpha subunit C-terminal domain in complex with CAP and DNA
Length: 17
Consensus: TwnnnnnnnnnnTGtGA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 28 8 8 52 w
03 24 24 24 24 n
04 24 24 24 24 n
05 24 24 24 24 n
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 2 8 8 78 T
14 0 0 96 0 G
15 17 17 10 52 t
16 0 0 96 0 G
17 96 0 0 0 A
Binding TFs: 3n4m_A (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 3n4m_E
3n4m_D

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