DNA Binding Motif

Accessions: PH0031.1 (JASPAR 2018)
Names: Evx1
Organisms: Mus musculus
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: universal protein binding microarray (PBM)
Length: 17
Consensus: wvarcTAATTAgygswc
Weblogo:
PSSM: P0 A C G T
01 47 6 3 45 w
02 30 25 33 11 v
03 36 22 21 22 a
04 47 15 26 13 r
05 5 66 18 11 c
06 1 3 0 96 T
07 85 14 0 0 A
08 99 1 0 0 A
09 0 0 1 99 T
10 0 0 14 85 T
11 96 0 3 1 A
12 11 18 66 5 g
13 3 44 6 48 y
14 17 20 46 18 g
15 20 25 38 17 s
16 36 16 17 30 w
17 24 36 24 16 c
Binding TFs: P23683 (Homeobox domain)
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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