DNA Binding Motif

Accessions: 5ciz_AB (3D-footprint 20231221)
Names: cAMP-activated global transcriptional regulator CRP
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: E. coli RNA polymerase alpha subunit CTD in complex with CAP and DNA: A(5)-tract binding site for alpha CTD
Length: 5
Consensus: TCacA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 0 96 0 0 C
03 57 13 13 13 a
04 13 54 16 13 c
05 96 0 0 0 A
Binding TFs: 5ciz_A (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 5ciz_D
5ciz_E

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