DNA Binding Motif

Accessions: MA1414.1 (JASPAR 2024)
Names: E2FA
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 10
Consensus: wgGCGCCAwa
Weblogo:
PSSM: P0 A C G T
01 394 203 184 670 w
02 355 339 579 178 g
03 23 62 1355 11 G
04 21 1375 22 33 C
05 35 6 1391 19 G
06 7 1415 18 11 C
07 1 1376 1 73 C
08 1368 10 21 52 A
09 574 345 121 411 w
10 535 293 334 289 a
Type: Heterodimer
Binding TFs: Q9FNY0 (E2F/DP family winged-helix DNA-binding domain)
Q9FNY0
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.