DNA Binding Motif

						

			
Accessions: MA1292.1 (JASPAR 2024), M0530 (AthalianaCistrome v4_May2016)

			
Names: MYB27, MYB27.DAP, T14508;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: aaaAARTTAGGTAwa
Weblogo: 
PSSM: P0      A      C      G      T
01    278     80    109    129      a
02    357     55     77    107      a
03    385     19     71    121      a
04    469      0      6    121      A
05    495      0      2     99      A
06    412      0    178      6      R
07      0      0      1    595      T
08      0      0      0    596      T
09    595      0      0      1      A
10      0      0    596      0      G
11      0      0    596      0      G
12      0      5      0    591      T
13    512     48     25     11      A
14    277     66    103    150      w
15    315     55    139     87      a
Type: Heterodimer
Binding TFs: Q9SCP1 / T14508 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Q9SCP1
Binding Sites: MA1292.1.1
MA1292.1.10
MA1292.1.11
MA1292.1.12
MA1292.1.13
MA1292.1.14
MA1292.1.15
MA1292.1.16
MA1292.1.17
MA1292.1.18
MA1292.1.19
MA1292.1.2
MA1292.1.20
MA1292.1.3
MA1292.1.4
MA1292.1.5
MA1292.1.6
MA1292.1.7
MA1292.1.8
MA1292.1.9
			
Publications: Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.