DNA Binding Motif

Accessions: Sox11_DBD (HumanTF 1.0), MA0869.1 (JASPAR 2018)
Names: Sox11
Organisms: Mus musculus
Libraries: HumanTF 1.0 1, JASPAR 2018 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
2 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3; Possible binding to single stranded DNA, HT-SELEX
Length: 15
Consensus: AACAATTkCAGTGTT
Weblogo:
PSSM: P0 A C G T
01 305 0 0 0 A
02 305 0 0 0 A
03 0 305 0 0 C
04 305 0 0 0 A
05 305 0 0 0 A
06 0 0 0 305 T
07 0 1 0 305 T
08 41 39 305 425 k
09 0 305 0 1 C
10 305 0 0 0 A
11 0 0 305 99 G
12 0 0 2 305 T
13 0 0 305 0 G
14 0 0 0 305 T
15 1 14 5 305 T
Type: Heterodimer
Binding TFs: Q7M6Y2 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Sox11_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

Harley VR, Clarkson MJ, Argentaro A. The molecular action and regulation of the testis-determining factors, SRY (sex-determining region on the Y chromosome) and SOX9 [SRY-related high-mobility group (HMG) box 9]. Endocr Rev 24:466-87 (2003). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.