DNA Binding Motif

Accessions: MA1205.1 (JASPAR 2018)
Names: AGL6
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: TTwCCaAAAAwRGaAAaww
Weblogo:
PSSM: P0 A C G T
01 83 8 5 386 T
02 72 1 8 401 T
03 200 8 67 207 w
04 11 465 5 1 C
05 1 394 0 87 C
06 253 92 39 98 a
07 347 8 42 85 A
08 467 0 2 13 A
09 422 0 0 60 A
10 385 18 23 56 A
11 206 49 34 193 w
12 128 0 353 1 R
13 0 0 482 0 G
14 295 71 13 103 a
15 441 4 3 34 A
16 432 4 9 37 A
17 247 61 113 61 a
18 256 27 46 153 w
19 237 41 26 178 w
Binding TFs: P29386 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

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