DNA Binding Motif

Accessions: MA1205.1 (JASPAR 2024), M0483 (AthalianaCistrome v4_May2016)
Names: AGL6, AGL6.DAP, T08408;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: TTwCCaAAAAwRGaAAaww
Weblogo:
PSSM: P0 A C G T
01 83 8 5 386 T
02 72 1 8 401 T
03 200 8 67 207 w
04 11 465 5 1 C
05 1 394 0 87 C
06 253 92 39 98 a
07 347 8 42 85 A
08 467 0 2 13 A
09 422 0 0 60 A
10 385 18 23 56 A
11 206 49 34 193 w
12 128 0 353 1 R
13 0 0 482 0 G
14 295 71 13 103 a
15 441 4 3 34 A
16 432 4 9 37 A
17 247 61 113 61 a
18 256 27 46 153 w
19 237 41 26 178 w
Type: Heterodimer
Binding TFs: P29386 / T08408 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
P29386
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.