DNA Binding Motif

						

			
Accessions: MA0435.1 (JASPAR 2024)

			
Names: YPR015C
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 20
Consensus: tkwaraCGTAAATCmtwwhh
Weblogo: 
PSSM: P0      A      C      G      T
01     75    242    144    537      t
02    158    204    341    295      k
03    382    170    173    274      w
04    376    240    137    245      a
05    274     50    462    212      r
06    552    169    240     37      a
07     16    747     17    218      C
08      4      4    988      2      G
09      2     16      3    978      T
10    983      7      3      5      A
11    884      1    109      4      A
12    986      2      4      6      A
13      5      2      2    989      T
14      4    983      1      9      C
15    326    575     55     43      m
16     86    221     77    613      t
17    258    190    196    354      w
18    450    110    173    266      w
19    281    396     62    260      h
20    333    330     68    266      h
Type: Heterodimer
Binding TFs: Q12531 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain)
Q12531
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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