DNA Binding Motif

Accessions: vfl_SOLEXA_5_FBgn0259789 (FlyZincFinger 1.0 )
Names: CG12701
Organisms: Drosophila melanogaster
Libraries: FlyZincFinger 1.0 1
1 Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]
Length: 15
Consensus: kkkbkCAGGTAGsyg
Weblogo:
PSSM: P0 A C G T
01 110 150 196 229 k
02 149 123 254 235 k
03 144 119 234 264 k
04 116 212 237 196 b
05 54 0 478 229 k
06 7 749 0 5 C
07 756 1 1 3 A
08 0 0 731 30 G
09 1 0 750 10 G
10 4 0 3 754 T
11 756 5 0 0 A
12 76 75 566 44 G
13 145 203 230 183 s
14 140 227 167 217 y
15 169 99 277 160 g
Binding TFs: vfl (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Publications: Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]

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