DNA Binding Motif

Accessions: 6jgw_B (3D-footprint 20231221)
Names: CadR
Organisms: Pseudomonas putida
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the transcriptional regulator CadR from P. putida in complex with DNA
Length: 9
Consensus: CnnTnTnGT
Weblogo:
PSSM: P0 A C G T
01 7 73 9 7 C
02 24 24 24 24 n
03 24 24 24 24 n
04 7 9 7 73 T
05 24 24 24 24 n
06 9 7 7 73 T
07 24 24 24 24 n
08 0 0 96 0 G
09 9 7 7 73 T
Binding TFs: 6jgw_B (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
Binding Sites: 6jgw_C
6jgw_D
Publications: Liu X, Hu Q, Yang J, Huang S, Wei T, Chen W, He Y, Wang D, Liu Z, Wang K, Gan J, Chen H. Selective cadmium regulation mediated by a cooperative binding mechanism in CadR. Proc Natl Acad Sci U S A 116:20398-20403 (2019). [Pubmed]

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