DNA Binding Motif

Accessions: 1a1h_A (3D-footprint 20231221)
Names: QGSR ZINC FINGER PEPTIDE
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)
Length: 9
Consensus: TgCCCaCGC
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 0 16 64 16 g
03 0 96 0 0 C
04 0 96 0 0 C
05 0 96 0 0 C
06 48 16 16 16 a
07 0 96 0 0 C
08 0 0 96 0 G
09 0 96 0 0 C
Binding TFs: 1a1h_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1a1h_B
1a1h_C
Publications: Elrod-Erickson M, Benson T.E, Pabo C.O. High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure (London, England : 1993) 6:451-64 (1998). [Pubmed]

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