DNA Binding Motif

Accessions: EEAD0015 (EEADannot 2023-12-22)
Names: BdTHX1
Organisms: Brachypodium distachyon
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 10
Consensus: ywTTTACyGc
Weblogo:
PSSM: P0 A C G T
01 0.112 0.265 0.102 0.520 y
02 0.295 0.000 0.051 0.653 w
03 0.010 0.000 0.051 0.938 T
04 0.000 0.000 0.000 1.000 T
05 0.071 0.091 0.000 0.836 T
06 0.938 0.040 0.000 0.020 A
07 0.000 0.989 0.000 0.010 C
08 0.020 0.612 0.010 0.357 y
09 0.091 0.081 0.714 0.112 G
10 0.000 0.673 0.122 0.204 c
Binding TFs: BdTHX1 (Myb/SANT-like DNA-binding domain)
Publications: Fan M, Herburger K, Jensen JK, Zemelis-Durfee S, Brandizzi F, Fry SC, Wilkerson CG. A Trihelix Family Transcription Factor is Associated with Key Genes in Mixed-linkage Glucan Accumulation. Plant Physiol : (2018). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.