DNA Binding Motif
| Accessions: | 4f6n_A (3D-footprint 20231221) |
| Names: | Transcriptional regulator Kaiso |
| Organisms: | Homo sapiens |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of Kaiso zinc finger DNA binding protein in complex with methylated CpG site DNA |
| Length: | 9 |
| Consensus: | gannnnGng |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 19 19 39 19 g 02 63 13 10 10 a 03 24 24 24 24 n 04 24 24 24 24 n 05 24 24 24 24 n 06 24 24 24 24 n 07 7 7 74 8 G 08 24 24 24 24 n 09 13 14 56 13 g |
| Binding TFs: | 4f6n_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | 4f6n_D 4f6n_E |
| Publications: | Buck-Koehntop B.A, Stanfield R.L, Ekiert D.C, Martinez-Yamout M.A, Dyson H.J, Wilson I.A, Wright P.E. Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso. Proceedings of the National Academy of Sciences of the United States of America 109:15229-34 (2012). [Pubmed] |
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