DNA Binding Motif

Accessions: CUX1_FOXI1 (HumanTF2 1.0)
Names: CUX1_FOXI1
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 19
Consensus: rTmawCAcgmkrATCRATt
Weblogo:
PSSM: P0 A C G T
01 149 50 158 20 r
02 61 44 29 307 T
03 307 190 34 22 m
04 307 82 44 57 a
05 307 26 44 163 w
06 31 307 26 85 C
07 307 58 26 26 A
08 73 124 47 64 c
09 65 72 98 73 g
10 102 101 58 47 m
11 50 71 89 97 k
12 116 23 95 74 r
13 307 0 20 19 A
14 0 3 6 307 T
15 0 307 0 28 C
16 89 9 219 1 R
17 307 0 0 15 A
18 32 4 0 307 T
19 73 57 46 131 t
Type: Heterodimer
Binding TFs: CUX1_TF1 (Homeobox domain, CUT domain, Homeobox KN domain)
FOXI1_TF2 (Fork head domain)
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.