footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Motif

Accessions:	Lrp (RegulonDB 7.5)
Names:	Lrp, Lrp transcriptional dual regulator
Organisms:	ECK12
Libraries:	RegulonDB 7.5 ¹ ¹ Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length:	12
Consensus:	awttTtwTkCtk
Weblogo:
PSSM:	P0 A C G T 01 25 17 17 13 a 02 31 3 11 27 w 03 10 5 15 42 t 04 11 0 13 48 t 05 9 6 4 53 T 06 4 15 6 47 t 07 44 6 4 18 w 08 6 3 4 59 T 09 14 12 25 21 k 10 7 53 2 10 C 11 7 8 10 47 t 12 4 8 37 23 k
Binding TFs:	ECK120005016 (AsnC family, AsnC-type helix-turn-helix domain, Winged helix-turn-helix DNA-binding)
Binding Sites:	ECK120011386 ECK120011632 ECK120011637 ECK120011642 ECK120011648 ECK120011808 ECK120011810 ECK120012411 ECK120012931 ECK120012933 ECK120012935 ECK120012937 ECK120012939 ECK120012941 ECK120012947 ECK120013168 ECK120013170 ECK120013172 ECK120013269 ECK120013271 ECK120013273 ECK120013277 ECK120013349 ECK120013351 ECK120013353 ECK120013400 ECK120013501 ECK120013659 ECK120013763 ECK120013765 ECK120013767 ECK120013839 ECK120013843 ECK120013849 ECK120013853 ECK120013871 ECK120013884 ECK120013886 ECK120013914 ECK120013918 ECK120013922 ECK120013926 ECK120013930 ECK120013976 ECK120013978 ECK120013980 ECK120016176 ECK120016192 ECK120016195 ECK120034483 ECK120034485 ECK120034487 ECK120034489 ECK120034491 ECK120034493 ECK120035006 ECK120035008 ECK120035010 ECK120035018 ECK120035020 ECK120035022 ECK120048918 ECK120048920 ECK120048922 ECK120048924 ECK120048926 ECK120048928 ECK125108671 ECK125108673 ECK125108675 ECK125141480 ECK125141481 ECK125141482 ECK125141483 ECK125141484 ECK125141485

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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