DNA Binding Motif

Accessions: M1092_1.02 (CISBP 1.02)
Names: Lim3, T098489_1.02
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 10
Consensus: cyaaTywvsy
Weblogo:
PSSM: P0 A C G T
01 0.2167 0.3137 0.2395 0.2301 c
02 0.0956 0.3724 0.0443 0.4878 y
03 0.5133 0.1851 0.1926 0.1089 a
04 0.6505 0.1437 0.0758 0.1300 a
05 0.0561 0.1422 0.0078 0.7939 T
06 0.2054 0.2801 0.1584 0.3561 y
07 0.3403 0.1849 0.1849 0.2900 w
08 0.2671 0.2725 0.2645 0.1959 v
09 0.1947 0.2602 0.3024 0.2427 s
10 0.2290 0.2797 0.2383 0.2531 y
Binding TFs: T098489_1.02 (Homeobox domain, LIM domain, Homeobox KN domain)
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

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