DNA Binding Motif

Accessions: UP00078A_1 (UniPROBE 20160601)
Names: ARID domain-containing protein 3A, Arid3a, AT rich interactive domain 3A (Bright like), AT-rich interactive domain-containing protein 3A, B-cell regulator of IgH transcription, Dead ringer-like protein 1, Dri1, Dril1
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: sgktTTAATTAAwmtwy
Weblogo:
PSSM: P0 A C G T
01 0.18 0.27 0.38 0.17 s
02 0.21 0.22 0.35 0.22 g
03 0.18 0.21 0.34 0.26 k
04 0.22 0.20 0.19 0.39 t
05 0.09 0.11 0.08 0.72 T
06 0.04 0.10 0.05 0.82 T
07 0.70 0.01 0.18 0.11 A
08 0.89 0 0 0.11 A
09 0.11 0 0 0.89 T
10 0.11 0.18 0.01 0.70 T
11 0.82 0.05 0.10 0.04 A
12 0.72 0.08 0.11 0.09 A
13 0.60 0.05 0.09 0.27 w
14 0.47 0.28 0.06 0.19 m
15 0.23 0.23 0.19 0.35 t
16 0.27 0.23 0.13 0.37 w
17 0.24 0.30 0.20 0.26 y
Binding TFs: UP00078A (ARID/BRIGHT DNA binding domain)
Binding Sites: AAATTAAT
AATCAAAA
AATTAAAA
AATTAATA
AATTAATT
AATTTTAT
ATATCAAA
ATTAAATA
ATTAATCA
ATTAATTA
ATTAATTG
ATTTGATA
CTAATTAA
GATATCAA
GATTAATC
GCAATTAA
TAATCAAA
TAATTAAA
TTAATCAA
AATTTAAT
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.