DNA Binding Motif

Accessions: 3jrb_B (3D-footprint 20231221)
Names: DNA-binding protein fis
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center
Length: 6
Consensus: TGTnTG
Weblogo:
PSSM: P0 A C G T
01 9 9 9 69 T
02 0 0 96 0 G
03 0 0 0 96 T
04 24 24 24 24 n
05 9 9 9 69 T
06 11 9 67 9 G
Binding TFs: 3jrb_B (Bacterial regulatory protein, Fis family)
Binding Sites: 3jrb_C
3jrb_D
Publications: Stella S, Cascio D, Johnson R.C. The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes & development 24:814-26 (2010). [Pubmed]

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