DNA Binding Motif

						

			
Accessions: MA0948.1 (JASPAR 2024)

			
Names: ARR18
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 13
Consensus: atmwAGATAcGrt
Weblogo: 
PSSM: P0      A      C      G      T
01    324    225    225    225      a
02    202    202    202    394      t
03    274    370    178    178      m
04    329    186    194    290      w
05    834     25     25    115      A
06      0     88    912      0      G
07    999      0      0      0      A
08      0      0      0    999      T
09    728     25     25    222      A
10     48    673     48    231      c
11    159     72    697     72      G
12    341    243    264    151      r
13    225    225    225    326      t
Type: Heterodimer
Binding TFs: Q9FGT7 (Response regulator receiver domain, Myb-like DNA-binding domain)
Q9FGT7
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.